Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 839970928

[ DOI: https://doi.org/10.35077/ace-tag ]

 

Dataset Citation:

Kalmbach, Brian, Lee, Brian R., De Kock, Christiaan P. J., Lein, Ed, Molnar, Gabor, Tamás, Gábor, Mansvelder, Huibert D., Miller, Jeremy, Ting, Jonathan T., Kruse, Lauren, Jorstad, Nikolas, Dalley, Rachel, Sorensen, Staci A., Chartrand, Tom, Bakken, Trygve, Allen Institute For Brain Science. (2022). Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 839970928. [ Dataset / Microscopy ]. Brain Image Library. https://doi.org/10.35077/ace-tag

 

Abstract:

Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).

 

Methods:

No description found.

 

TechnicalInfo:

DATASET METADATA:
title	Neuron Morphology data in .swc format from Patch-seq experiments in human neocortex, Cell ID 839970928
GeneralModality	cell morphology
Technique	Patch-seq
SPECIMEN METADATA:
LocalID	839970928
Species	human
NCBITaxonomy	NCBI:txid9606
SampleLocalID	839970928
Locations	MTG
INSTRUMENT METADATA:
MicroscopeType	NA
MicroscopeManufacturerAndModel	NA
IMAGE METADATA:
xAxis	NA
yAxis	NA
zAxis	NA
Number	NA
displayColor	NA
stepSizeX	0.114
stepSizeY	0.114

 

Funding:

National Institutes of Health 1-U01-MH114812-01 A multimodal atlas of human cell types

 

Contributors:

Kalmbach, Brian (ProjectMember) [ORCID: https://orcid.org/0000-0003-3136-8097 ] Allen Institute for Brain Science
Lee, Brian R. (ProjectMember) [ORCID: https://orcid.org/0000-0002-3210-5638 ] Allen Institute for Brain Science
De Kock, Christiaan P. J. (ProjectMember) [ORCID: https://orcid.org/0000-0002-6697-0179 ] Vrije Universiteit Amsterdam
Lein, Ed (ProjectLeader) [ORCID: https://orcid.org/0000-0001-9012-6552 ] Allen Institute for Brain Science
Molnar, Gabor (ProjectMember) [ORCID: https://orcid.org/0000-0001-7959-139X ] University of Szeged
Tamás, Gábor (ProjectLeader) [ORCID: https://orcid.org/0000-0002-7905-6001 ] University of Szeged
Mansvelder, Huibert D. (ProjectLeader) [ORCID: https://orcid.org/0000-0003-1365-5340 ] Vrije Universiteit Amsterdam
Miller, Jeremy (ProjectMember) [ORCID: https://orcid.org/0000-0003-4549-588X ] Allen Institute for Brain Science
Ting, Jonathan T. (ProjectMember) [ORCID: https://orcid.org/0000-0001-8266-0392 ] Allen Institute for Brain Science
Kruse, Lauren (ProjectManager) [ORCID: https://orcid.org/0000-0002-3428-2443 ] Allen Institute for Brain Science
Jorstad, Nikolas (ProjectMember) [ORCID: https://orcid.org/0000-0001-7906-9470 ] Allen Institute for Brain Science
Dalley, Rachel (ProjectMember) [ORCID: https://orcid.org/0000-0001-7461-7845 ] Allen Institute for Brain Science
Sorensen, Staci A. (ProjectMember) [ORCID: https://orcid.org/0000-0002-6799-2126 ] Allen Institute for Brain Science
Chartrand, Tom (ProjectMember) [ORCID: https://orcid.org/0000-0002-7093-8681 ] Allen Institute for Brain Science
Bakken, Trygve (ProjectMember) [ORCID: https://orcid.org/0000-0003-3373-7386 ] Allen Institute for Brain Science
Allen Institute For Brain Science (ResearchGroup) Allen Institute for Brain Science

 

Related Identifiers:

No related identifiers found.

 

Data location on the Brain Image Library Analysis Ecosystem:

/bil/data/69/fe/69fe931fee2b2215/839970928

 

Dataset Download Link:

[ https: https://download.brainimagelibrary.org/69/fe/69fe931fee2b2215/839970928]