The collection of patch-wise (ST, DAPI/PolyT) data pairs derived from one P56 male mouse brain atlas

[ DOI: https://doi.org/10.35077/g.1176 ]

 

Dataset Citation:

Wu, Jiqing. (2025). The collection of patch-wise (ST, DAPI/PolyT) data pairs derived from one P56 male mouse brain atlas. [ Collection / Dataset ]. Brain Image Library. https://doi.org/10.35077/g.1176

 

Abstract:

This dataset is derived from the P56 male mouse brain atlas (MBA) containing MERFISH imaging and DAPI/PolyT-stained imaging data. After brain image registration and quality control, 50 slides of paired ST and DAPI/PolyT data remain. Then, we sequentially crop 119808 (ST, DAPI/PolyT) image data pairs out of the MBA, at a spatial resolution of 512 x 512. For efficiently feeding the data pairs to the GenAI model, we store the sparse ST data in the format of PyData/sparse compatible .npz and the bioimage array in the format of zarr compatible .zip.

 

Funding:

No funders found.

 

Contributors:

Wu, Jiqing (ProjectLeader) [ORCID: https://orcid.org/0000-0002-6898-8698 ] University of Basel
Koelzer, Viktor (ProjectManager) [ORCID: https://orcid.org/0000-0001-9206-4885 ] University Hospital of Basel

 

Related Identifiers:

Requires [ URL : https://download.brainimagelibrary.org/64/a7/64a7615a166fc0c3 ];
IsDocumentedBy [ URL : https://github.com/CTPLab/Tera-MIND ];
IsDocumentedBy [ DOI : https://doi.org/10.35077/g.610 ];