BRAIN Initiative Cell Atlas Network basal ganglia MERFISH data

[ DOI: https://doi.org/10.35077/g.1194 ]

 

Dataset Citation:

Behrens, Maria Margarita, Ren, Bing, Zhu, Quan, Ecker, Joseph. (2026). BRAIN Initiative Cell Atlas Network basal ganglia MERFISH data. [ Collection / Dataset ]. Brain Image Library. https://doi.org/10.35077/g.1194

 

Abstract:

MERFISH Spatial transcriptomic data from the basal ganglia (BG) of 4 human donors, imaged on Vizgen MERSCOPE Ultra using a custom pan-BG panel of probes. Gene panel was designed to allow for annotation of major cell types of the basal ganglia for the purpose of adding spatial information to the brain atlas of the BICAN project. Additionally, the gene panel contains 20 control genes with predictable expression accross cell types.

 

Funding:

National Institutes of Health 1-UM1-MH130994-01 Center for Multiomic Human Brain Cell Atlas

 

Contributors:

Behrens, Maria Margarita (ProjectLeader) [ORCID: https://orcid.org/0000-0002-7168-8186 ] Salk Institute for Biological Studies
Ren, Bing (ProjectLeader) [ORCID: https://orcid.org/0000-0002-5435-1127 ] University of California San Diego
Zhu, Quan (ProjectLeader) [ORCID: https://orcid.org/0000-0001-5731-4658 ] University of California San Diego
Ecker, Joseph (ProjectLeader) [ORCID: https://orcid.org/0000-0001-5799-5895 ] Salk Institute for Biological Studies
Schenker-Ahmed, Natalie (Researcher) [ORCID: https://orcid.org/0000-0002-2651-1576 ] Salk Institute for Biological Studies
Kern, Colin (Researcher) [ORCID: https://orcid.org/0000-0002-3249-6405 ] University of California San Diego
Zhao, Zoey (Researcher) [ORCID: https://orcid.org/0009-0005-3822-7985 ] University of California San Diego
Boone, Eric (Researcher) [ORCID: https://orcid.org/0009-0005-6105-2693 ] University of California San Diego
Olness, Jacqueline (Researcher) [ORCID: https://orcid.org/0009-0006-0602-0127 ] University of California San Diego
Flores, Jesus (Researcher) [ORCID: https://orcid.org/0009-0001-5788-6004 ] University of California San Diego
Tai, Chu-Yi (Researcher) [ORCID: https://orcid.org/0009-0000-2437-4240 ] University of California San Diego
Yang, Kaifu (Researcher) [ORCID: https://orcid.org/0009-0002-8085-3128 ] University of California San Diego

 

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