Mouse whole-brain transcriptomic cell type atlas - MERSCOPE v1
[ DOI: https://doi.org/10.35077/g.610 ]
Dataset Citation:
Allen Institute, Zeng, Hongkui. (2023). Mouse whole-brain transcriptomic cell type atlas - MERSCOPE v1. [ Collection / Dataset ]. Brain Image Library. https://doi.org/10.35077/g.610
Abstract:
Spatial transcriptomics atlas of the entire brain of an adult mouse (P56). We profiled 500 genes which were selected to maximize our ability to relate each cell to one of the 5200 cell types defined in our RNAseq-based taxonomy. We image 10 µm section which were acquired at an interval of 200 µm
TechnicalInfo:
Dataset was resegmented using cellpose
Funding:
National Institutes of Health 1-U19-MH114830-01 A comprehensive whole-brain atlas of cell types in the mouse
Contributors:
Allen Institute (ResearchGroup) Allen Institute for Brain ScienceZeng, Hongkui (ProjectLeader) [ORCID: https://orcid.org/0000-0002-0326-5878 ] Allen Institute for Brain Science
Kunst, Michael (Researcher) [ORCID: https://orcid.org/0000-0003-4159-8056 ] Allen Institute for Brain Science
Waters, Jack (Other) [ORCID: https://orcid.org/0000-0002-2312-4183 ] Allen Institute for Brain Science
McMillen, Delissa (Other) [ORCID: https://orcid.org/0000-0002-3413-4424 ] Allen Institute for Brain Science