Detection and Skeletonization of tracer injections using topological methods.
(2020). Detection and Skeletonization of tracer injections using topological methods.. [ Collection / Dataset ].
Brain Image Library. https://doi.org/10.35077/g.9
The Serial Two-Photon (STP) dataset presented in this paper was collected as a part of Brain Initiative Cell Census Network (BICCN) and downloaded from Brain Image Library (BIL). One STP dataset was involvedin the development and demonstration of methods in this paper. The dual-color fluorescent micro-optical sectioning tomography(fMOST) data presented in this paper , both raw images and sin-gle neuron reconstruction data (“ground truth”), were collectedas a part of BICCN and downloaded from BIL. One fMOST dataset was involved in the de-velopment and demonstration of methods in this paper.
For STP data, a full description of the protocol is available at protocols.io: dx.doi.org/10.17504/protocols.io.sqcedsw For fMOST data, a full description of the data collection protocol is available at protocols.io: dx.doi.org/10.17504/protocols.io.ssgeebw
Full description of the data usage and algorithm development is available from https://arxiv.org/pdf/2004.02755v1.pdf.
NATIONAL INSTITUTE OF BIOMEDICAL IMAGING AND BIOENGINEERING R01-EB022899 METHODS FROM COMPUTATIONAL TOPOLOGY AND GEOMETRY FOR ANALYSING NEURONAL TREE AND GRAPH DATA;
National Institutes of Mental Health U19-MH114821 A COMPREHENSIVE CENTER FOR MOUSE BRAIN CELL ATLAS;
National Institutes of Mental Health U01-MH114824 COLLABORATORY FOR ATLASING CELL TYPE ANATOMY IN THE FEMALE AND MALE MOUSE BRAIN
Mitra, Partha (ProjectLeader)
Cold Spring Harbor Laboratory
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