599648
[ DOI: https://doi.org/10.35077/nip ]
Dataset Citation:
Allen Institute. (2022). 599648. [ Dataset / Microscopy ]. Brain Image Library. https://doi.org/10.35077/nip
Abstract:
This is a series of monosynaptic, retrograde trans-synaptic tracing images of whole mouse brain to map whole-brain inputs to genetically-identified cell populations brain-wide.
Methods:
No description found.
TechnicalInfo:
| DATASET METADATA: | |
| title | 599648 |
| GeneralModality | connectivity |
| Technique | retrograde transsynaptic tracing |
| SPECIMEN METADATA: | |
| LocalID | 599648 |
| Species | Mouse |
| NCBITaxonomy | NCBI:txid10090 |
| Age | 79.0 |
| Ageunit | Days |
| Sex | Female |
| Genotype | Sst-IRES-Cre/wt |
| OrganLocalID | 1135871702.0 |
| OrganName | Brain |
| SampleLocalID | 0539072401 |
| INSTRUMENT METADATA: | |
| MicroscopeType | Two Photon |
| MicroscopeManufacturerAndModel | TissueVision TissueCyte 1000 |
| ObjectiveName | Zeiss 20X Plan-Apochromat |
| ObjectiveImmersion | Water |
| ObjectiveNA | 1.0 |
| ObjectiveMagnification | 20X |
| DetectorType | PMT |
| DetectorModel | Hamamatsu R3896 |
| IlluminationWavelength | 925nm |
| DetectionWavelength | 447-593nm |
| SampleTemperature | 20.0 |
| IMAGE METADATA: | |
| xAxis | left-to-right |
| yAxis | superior-to-inferior |
| zAxis | posterior-to-anterior |
| Number | 1,2,3,red,green,blue |
| displayColor | (1.0,0.0,0.0),(0.0,1.0,0.0),(0.0,0.0,1.0) |
| Representation | neurite |
| Flurophore | CH1(background fluorescence) CH2(GFP) CH3(background fluorescence) |
| stepSizeX | 0.875 |
| stepSizeY | 0.875 |
| stepSizeZ | 100.0 |
| Channels | 3.0 |
| Slices | 140.0 |
| z | 1.0 |
| Xsize | 16000.0 |
| Ysize | 12000.0 |
| Zsize | 1.0 |
Funding:
National Institutes of Health 1-U19-MH114830-01 A comprehensive whole-brain atlas of cell types in the mouse
Contributors:
Allen Institute (ResearchGroup) Allen Institute for Brain ScienceZeng, Hongkui (ProjectLeader) [ORCID: https://orcid.org/0000-0002-0326-5878 ] Allen Institute for Brain Science
Wakeman, Wayne (DataCurator) [ORCID: https://orcid.org/0000-0002-3693-3609 ] Allen Institute for Brain Science
Related Identifiers:
No related identifiers found.
Data location on the Brain Image Library Analysis Ecosystem:
/bil/data/79/43/79438b8a21d59f46/0539072401
Dataset Download Link:
[ https: https://download.brainimagelibrary.org/79/43/79438b8a21d59f46/0539072401]