BIL Logo 599648

[ DOI: https://doi.org/10.35077/nip ]

 

Dataset Citation:
Allen Institute. (2022). 599648. [ Dataset / Microscopy ]. Brain Image Library. https://doi.org/10.35077/nip

 

Abstract:
This is a series of monosynaptic, retrograde trans-synaptic tracing images of whole mouse brain to map whole-brain inputs to genetically-identified cell populations brain-wide.

 

Methods:
No description found.

 

TechnicalInfo:
DATASET METADATA:
title 599648
GeneralModality connectivity
Technique retrograde transsynaptic tracing
SPECIMEN METADATA:
LocalID 599648
Species Mouse
NCBITaxonomy NCBI:txid10090
Age 79.0
Ageunit Days
Sex Female
Genotype Sst-IRES-Cre/wt
OrganLocalID 1135871702.0
OrganName Brain
SampleLocalID 0539072401
INSTRUMENT METADATA:
MicroscopeType Two Photon
MicroscopeManufacturerAndModel TissueVision TissueCyte 1000
ObjectiveName Zeiss 20X Plan-Apochromat
ObjectiveImmersion Water
ObjectiveNA 1.0
ObjectiveMagnification 20X
DetectorType PMT
DetectorModel Hamamatsu R3896
IlluminationWavelength 925nm
DetectionWavelength 447-593nm
SampleTemperature 20.0
IMAGE METADATA:
xAxis left-to-right
yAxis superior-to-inferior
zAxis posterior-to-anterior
Number 1,2,3,red,green,blue
displayColor (1.0,0.0,0.0),(0.0,1.0,0.0),(0.0,0.0,1.0)
Representation neurite
Flurophore CH1(background fluorescence) CH2(GFP) CH3(background fluorescence)
stepSizeX 0.875
stepSizeY 0.875
stepSizeZ 100.0
Channels 3.0
Slices 140.0
z 1.0
Xsize 16000.0
Ysize 12000.0
Zsize 1.0

 

Funding:
National Institutes of Health 1-U19-MH114830-01 A comprehensive whole-brain atlas of cell types in the mouse

 

Contributors:
Allen Institute (ResearchGroup) Allen Institute for Brain Science
Zeng, Hongkui (ProjectLeader) [ORCID: https://orcid.org/0000-0002-0326-5878 ] Allen Institute for Brain Science
Wakeman, Wayne (DataCurator) [ORCID: https://orcid.org/0000-0002-3693-3609 ] Allen Institute for Brain Science

 

Related Identifiers:
No related identifiers found.

 

Data location on the Brain Image Library Analysis Ecosystem:
/bil/data/79/43/79438b8a21d59f46/0539072401

 

Dataset Download Link:

[ https: https://download.brainimagelibrary.org/79/43/79438b8a21d59f46/0539072401]