cadherin expression and projection mapping in MOp
[ DOI: https://doi.org/10.35077/tar ]
Dataset Citation:
Chen, Xiaoyin, Sun, Yu-Chi. (2022). cadherin expression and projection mapping in MOp. [ Dataset / Microscopy ]. Brain Image Library. https://doi.org/10.35077/tar
Abstract:
Correlating gene expression to projections in MOp using BARseq2. This dataset is part of Sun et al., 2021 (doi.org/10.1038/s41593-021-00842-4).
Methods:
in situ sequencing
TechnicalInfo:
| DATASET METADATA: | |
| title | cadherin expression and projection mapping in MOp |
| GeneralModality | Connectivity and spatial transcriptomics |
| Technique | BARseq |
| SPECIMEN METADATA: | |
| LocalID | XC116 |
| Species | mouse |
| NCBITaxonomy | NCBI:txid10090 |
| Age | 56-63 |
| Ageunit | Days |
| Sex | Male |
| Genotype | Strain_Name=C57Bl6/Agouti/Swiss |
| OrganName | Brain |
| Locations | Motor cortex |
| INSTRUMENT METADATA: | |
| MicroscopeType | Spinning disk confocal |
| MicroscopeManufacturerAndModel | Olympus IX-81, Crest Xlight v2 |
| IMAGE METADATA: | |
| Number | Sequencing images: 1,2,3,4,5,G,T,A,C,DIC; Hybridization images: 1,2,3,4,5,6,GFP,YFP,TxRed,Cy5,DAPI,DIC |
| displayColor | (0,1,1)(1,1,0),(1,0,1)(1,1,1)(0,0,0);(0,1,1)(1,1,0)(1,0,1),(1,1,1)(0,0,1),(0,0,0) |
| stepSizeX | 0.34/0.65 |
| stepSizeY | 0.34/0.65 |
| stepSizeZ | 1/7 |
Funding:
National Institutes of Health 5-U19-MH-114821-01 A Comprehensive Center for Mouse Brain Cell Atlas
Contributors:
Chen, Xiaoyin (Researcher) [ORCID: https://orcid.org/0000-0002-2807-6125 ] Allen InstituteSun, Yu-Chi (Researcher) [ORCID: https://orcid.org/0000-0002-8014-9387 ] New York University
Zador, Anthony (ProjectLeader) [ORCID: https://orcid.org/0000-0002-8431-9136 ] Cold Spring Harbor Laboratory
Related Identifiers:
No related identifiers found.
Data location on the Brain Image Library Analysis Ecosystem:
/bil/data/06/35/0635a0b3b0954c7e/20191216M1cdhs/
Dataset Download Link:
[ https: https://download.brainimagelibrary.org/06/35/0635a0b3b0954c7e/20191216M1cdhs/]